API Reference

krakenplot module

class krakenplot.KrakenSummary(infile: pathlib.Path, ignore_unclassified: bool = False)

Bases: object

Visualize and interrogate the summary report from the taxonomic classifier Kraken.

Parameters:

• infile – The path to the Kraken summary metric text file.
• ignore_unclassified – Whether to ignore unclassified assignments.

newick

Return a Newick string of this phylogeny.

toytree

Return a ToyTree object of this phylogeny.